Research Achievements
Peer-Reviewed Articles
In English / In Chinese / In Japanese
▪In English
- 195.
- Oyabu, A., Wu, L., Matsumoto, T., Kihara, N., Yamanaka, H., & Minamoto, T. (2024). The effect of artificial light at night on wild fish community: manipulative field experiment and species composition analysis using environmental DNA. Environmental Advances, 15, 100457. LINK
- 194.
- Sugiyama, Y., Matsuoka, S., Shimono, Y., Ushio, M., & Doi, H. (2024). Do aquatic fungal environmental DNA assemblages reflect the surrounding terrestrial sporocarp communities?. Fungal Ecology, 67, 101311. LINK
- 193.
- Zhu, M., Kuroki, M., Kobayashi, T., Yamakawa, T., Sado, T., Kodama, K., Horiguchi, T., & Miya, M. (2023). Comparison of fish fauna evaluated using aqueous eDNA, sedimentary eDNA, and catch surveys in Tokyo Bay, Central Japan. Journal of Marine Systems, 240, 103886. LINK
- 192.
- Kawakami, T., Yamazaki, A., Asami, M., Goto, Y., Yamanaka, H., Hyodo, S., Ueno, H., & Kasai, A. (2023). Evaluating the sampling effort for the metabarcoding-based detection of fish environmental DNA in the open ocean. Ecology and evolution, 13(3), e9921. LINK
- 191.
- Zhu, T., Sato, Y., Sado, T., Miya, M., & Iwasaki, W. (2023). MitoFish, MitoAnnotator, and MiFish pipeline: updates in 10 years. Molecular Biology and Evolution, 40(3), msad035. LINK
- 190.
- Miki, T., Yamanaka, H., Sogabe, A., Omori, K., Saito, Y., Minamoto, T., Uchii, K., Honjo, M. N., Suzuki, A. A., Kohmatsu, Y., & Kawabata, Z. I. (2023). Spatial epidemiology model can explain the seasonal dynamics of infectious disease Cyprinid herpesvirus 3 (CyHV-3) by thermoregulation behavior of the host, common carp (Cyprinus carpio). Theoretical Ecology, 16(3), 195-208. LINK
- 189.
- Kanbe, T., Mizumoto, H., Mitsuzuka, T., Nakajima, N., & Araki, H. (2023). Co-occurrence patterns of endangered Sakhalin taimen and introduced rainbow trout in Hokkaido, Japan, inferred by environmental DNA metabarcoding. Aquatic Conservation: Marine and Freshwater Ecosystems, 33(12), 1492-1500. LINK
- 188.
- Fukuzawa, T., Shirakura, H., Nishizawa, N., Nagata, H., Kameda, Y., & Doi, H. (2023). Environmental DNA extraction method from water for a high and consistent DNA yield. Environmental DNA, 5(4), 627-633. LINK
- 187.
- von der Heyden, S., Neef, G., Grevesse, T., Cwecwe, Y., Sado, T., Miya, M., Mosie, I., Creer, S., Skelton, P., & von Brandis, R. (2023). Environmental DNA biomonitoring in biodiversity hotspots: A case study of fishes of the Okavango Delta. Environmental DNA, 5(6), 1720-1731. LINK
- 186.
- Nishizawa, R., Nakao, R., Ushimaru, A., & Minamoto, T. (2023). Development of environmental DNA detection assays for snakes in paddy fields in Japan. Landscape and Ecological Engineering, 19(1), 3-10. LINK
- 185.
- Souma, R., Katano, I., Doi, H., Takahara, T., & Minamoto, T. (2023). Comparing environmental DNA with whole pond survey to estimate the total biomass of fish species in ponds. Freshwater Biology, 68(5), 727-736. LINK
- 184.
- Wu, Q., & Minamoto, T. (2023). Improvement of recovery yield of macro-organismal environmental DNA from seawater samples. Analytical Sciences, 39(5), 713-720. LINK
- 183.
- Wu, Q., Zhou, J., Komoto, T., Ishikawa, T., Goto, N., Sakata, M. K., Kitazawa, D., & Minamoto, T. (2023). Opposite trends in environmental DNA distributions of two freshwater species under climate change. Ecosphere, 14(9), e4651. LINK
- 182.
- Yano, N., Minamoto, T., Yamaguchi, H., Goto, T., & Nishikata, T. (2023). Comparison of Evolutionary Relationships between Branchiostoma floridae, Ciona intestinalis, and Homo sapiens Globins Provide Evidence of Gene Co-Option and Convergent Evolution. International Journal of Molecular Sciences, 24(21), 16009. LINK
- 181.
- Ushio, M., Sado, T., Fukuchi, T., Sasano, S., Masuda, R., Osada, Y., & Miya, M. (2023). Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities. ELife, 12. LINK
- 180.
- Sakata, M. K., Takeshita, D., Nishizawa, R., Sato, T., & Minamoto, T. (2023). An efficient environmental DNA detection method for rare species: a case study of a small salamander (Hynobius boulengeri). Analytical Sciences, 39(5), 721-728. LINK
- 179.
- Okanishi, M., Kohtsuka, H., Wu, Q., Shinji, J., Shibata, N., Tamada, T., Nakano, T., & Minamoto, T. (2023). Development of two new sets of PCR primers for eDNA metabarcoding of brittle stars (Echinodermata, Ophiuroidea). Metabarcoding and Metagenomics, 7, 51-72. LINK
- 178.
- Yoneya, K., Miki, T., & Takabayashi, J. (2023). Initial herbivory and exposure to herbivory-induced volatiles enhance arthropod species richness by diversifying community assemblages. Frontiers in Ecology and Evolution, 10, 1031664. LINK
- 177.
- Yoneya, K., Ushio, M., & Miki, T. (2023). Non-destructive collection and metabarcoding of arthropod environmental DNA remained on a terrestrial plant. Scientific Reports, 13(1), 7125. LINK
- 176.
- Mori, K., Imamura, A., Hirayama, I., & Minamoto, T. (2023). Detection of Echinococcus multilocularis in repurposed environmental DNA samples from river water. PeerJ, 11, e15431. LINK
- 175.
- Yoshitake, K., Yanagisawa, K., Sugimoto, Y., Nakamura, H., Mizusawa, N., Miya, M., Hamasaki, K., Kobayashi, T., Watabe, S., Nishikiori, K., & Asakawa, S. (2023). Pilot study of a comprehensive resource estimation method from environmental DNA using universal D-loop amplification primers. Functional & Integrative Genomics, 23(2), 96. LINK
- 174.
- Nakane, K., Liu, X., Doi, H., Dur, G., Kuwae, M., Ban, S., & Tsugeki, N. (2023). Sedimentary DNA can reveal the past population dynamics of a pelagic copepod. Freshwater Biology, 68(11), 1917-1928. LINK
- 173.
- Aoshima, I., Nakao, R., Minamoto, T., Ushimaru, A., & Sato, M. (2023). Heterogeneous preference for biodiversity in Japanese urban blue spaces based on people’s nature experiences: Analysis using eDNA and satisfaction data. City and Environment Interactions, 18, 100101. LINK
- 172.
- Doi, H., Matsuoka, S., Matsuzaki, S. I. S., Nagano, M., Sato, H., Yamanaka, H., Matsuhashi, S., Yamamoto, S., Minamoto, T., Araki, H., Ikeda, K., Kato, A., Kumei, K., Maki, N., Mitsuzuka, T., Takahara, T., Toki, K., Ueda, N., Watanabe, T., Yamazoe, K., & Miya, M. (2023). Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology, 68(8), 1346-1358. LINK
- 171.
- Doi, H., & Kelly, R. P. (2023). Ethical considerations for human sequences in environmental DNA. Nature Ecology & Evolution, 7(9), 1334-1335. LINK
- 170.
- Doi, H., & Nakamura, K. (2023). Dominant barriers and the solutions to the social application of environmental DNA. Landscape and Ecological Engineering, 19(2), 305-312. LINK
- 169.
- Huston, G. P., Lopez, M. L. D., Cheng, Y., King, L., Duxbury, L. C., Picard, M., Thomson-Laing, G., Myler, E., Helbing, C. C., Kinnison, M. T., Saros, J. E., Gregory-Eaves, I., Monchamp, M. E., Wood, S. A., Armbrecht, L., Ficetola, G. F., Kurte, L., Von Eggers, J., Brahney, J., Parent, G., Sakata, M. K., Doi, H., & Capo, E. (2023). Detection of fish sedimentary DNA in aquatic systems: A review of methodological challenges and future opportunities. Environmental DNA, 5(6), 1449-1472. LINK
- 168.
- Ito, G., Yamauchi, H., Shigeyoshi, M., Ashino, K., Yonashiro, C., Asami, M., Goto, Y., Duda, J. J., & Yamanaka, H. (2023). Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration. Global Ecology and Conservation, 43, e02448. LINK
- 167.
- Sakata, A., Sado, T., Oka, S. I., Ushio, M., & Miya, M. (2023). Collection of environmental DNA from stemflow for monitoring arboreal biodiversity: Preliminary validation using lichens. MethodsX, 11, 102448. LINK
- 166.
- Tanaka, A., Katano, I., Doi, H., Iguchi, M., & Koike, S. (2023). Applicability of environmental DNA metabarcoding for the hyporheic zone of a stream bed. Environmental DNA, 5(6), 1667-1678. LINK
- 165.
- Wu, L., Wu, Q., Inagawa, T., Okitsu, J., Sakamoto, S., & Minamoto, T. (2023). Estimating the spawning activity of fish species using nuclear and mitochondrial environmental DNA concentrations and their ratios. Freshwater Biology, 68(1), 103-114. LINK
- 164.
- Jo, T. S. (2023). Correlation between the number of eDNA particles and species abundance is strengthened by warm temperature: simulation and meta-analysis. Hydrobiologia, 850(1), 39-50. LINK
- 163.
- Takahara, T., Doi, H., Kosuge, T., Nomura, N., Maki, N., Minamoto, T., & Watanabe, K. (2023). Effective environmental DNA collection for an endangered catfish species: testing for habitat and daily periodicity. Ichthyological Research, 70(4), 409-418. LINK
- 162.
- Takahara, T., Fukui, K., Hiramatsu, D., Doi, H., Fujii, M., & Minamoto, T. (2023). Development of primer–probe sets for environmental DNA-based monitoring of pond smelt Hypomesus nipponensis and Japanese icefish Salangichthys microdon. Landscape and Ecological Engineering, 19(1), 11-19. LINK
- 161.
- Ogata, S., Nishiwaki, A., Yamazoe, K., Sugai, K., & Takahara, T. (2023). Discovery of unknown new ponds occupied by the endangered giant water bug Kirkaldyia deyrolli (Hemiptera: Heteroptera: Belostomatidae) by combining environmental DNA and capture surveys. Entomological Science, 26(1), e12540. LINK
- 160.
- Ogata, S., Doi, H., Igawa, T., Komaki, S., & Takahara, T. (2023). Environmental DNA methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds. Ecological Research, 37(6), 701-710. LINK
- 159.
- Ito, G., & Koya, Y. (2022). Phylogeographic structure of an endemic lineage of the eight-barbel loach Lefua echigonia around the Suzuka and Yoro Mountains, central Honshu, Japan. Biogeography, 24, 39-45.LINK
- 158.
- Wu, L., Yamamoto, Y., Yamaguchi, S., & Minamoto, T. (2022). Spatiotemporal changes in environmental DNA concentrations caused by fish spawning activity. Ecological Indicators, 142, 109213. LINK
- 157.
- Wakiya, R., Itakura, H., Hirae, T., Igari, T., Manabe, M., Matsuya, N., Sakata, M.K., Minamoto, T., Yada, T., & Kaifu, K. (2022). Slower growth of farmed eels stocked into rivers with higher wild eel density. Journal of Fish Biology, 101(3), 613-627. LINK
- 156.
- Tsugeki, N., Nakane, K., Doi, H., Ochi, N., & Kuwae, M. (2022). Reconstruction of 100-year dynamics in Daphnia spawning activity revealed by sedimentary DNA. Scientific Reports, 12(1), 1741. LINK
- 155.
- Jo, T., Tsuri, K., Hirohara, T., & Yamanaka, H. (2022). Warm temperature and alkaline conditions accelerate environmental RNA degradation. Environmental DNA. LINK
- 154.
- Jo, T., & Yamanaka, H. (2022). Meta-analyses of environmental DNA downstream transport and deposition in relation to hydrogeography in riverine environments. Freshwater Biology, 67(8), 1333-1343. LINK
- 153.
- Jo, T., & Yamanaka, H. (2022). Fine-tuning the performance of abundance estimation based on environmental DNA (eDNA) focusing on eDNA particle size and marker length. Ecology and Evolution, 12(8), e9234. LINK
- 152.
- Asai, T., Sugiyama, M., Omatsu, T., Yoshikawa, M., & Minamoto, T. (2022). Isolation of extended-spectrum β-lactamase-producing Escherichia coli from Japanese red fox (Vulpes vulpes japonica). MicrobiologyOpen, 11(5), e1317. LINK
- 151.
- Shiozuka, N., Katano, I., Doi, H., Nakamura, M., Shirako, T., & Ichiyanagi, H. (2022). Diurnal detection of environmental DNA of the semi-aquatic water shrew Chimarrogale platycephala using 25-h water sampling in streams. Landscape and Ecological Engineering, 19(1), 69-77. LINK
- 150.
- Nagayama, S., Oota, M., Fujita, T., Kitamura, J. I., Minamoto, T., Mori, S., Kato, M., Takeyama, N., Takino, F., Yonekura, R., & Yamanaka, H. (2022). Autumn dispersal and limited success of reproduction of the deepbody bitterling (Acheilognathus longipinnis) in terrestrialized floodplain. Knowledge & Management of Aquatic Ecosystems, (423), 4. LINK
- 149.
- Sakata, M. K., Sato, M., Sato, M. O., Watanabe, T., Mitsuishi, H., Hikitsuchi, T., Kobayashi, J., & Minamoto, T. (2022). Detection and persistence of environmental DNA (eDNA) of the different developmental stages of a vector mosquito, Culex pipiens pallens. Plos one, 17(8), e0272653. LINK
- 148.
- Oka, S. I., Miya, M., & Sado, T. (2022). Gravity filtration of environmental DNA: A simple, fast, and power-free method. MethodsX, 9, 101838. LINK
- 147.
- Nakagawa, H., Fukushima, K., Sakai, M., Wu, L., & Minamoto, T. (2022). Relationships between the eDNA concentration obtained from metabarcoding and stream fish abundance estimated by the removal method under field conditions. Environmental DNA, 4(6), 1369-1380. LINK
- 146.
- Kimura, M., Yamanaka, H., & Nakashima, Y. (2022). Application of Machine Learning to Environmental DNA Metabarcoding. IEEE Access, 10, 101790-101794. LINK
- 145.
- Miya, M., Sado, T., Oka, S. I., & Fukuchi, T. (2022). The use of citizen science in fish eDNA metabarcoding for evaluating regional biodiversity in a coastal marine region: A pilot study. Metabarcoding and Metagenomics, 6, e80444. LINK
- 144.
- Miya, M. (2022). Environmental DNA metabarcoding: a novel method for biodiversity monitoring of marine fish communities. Annual Review of Marine Science, 14, 161-185. LINK
- 143.
- Minamoto, T. (2022). Environmental DNA analysis for macro-organisms: species distribution and more. DNA Research, 29(3), dsac018. LINK
- 142.
- Matsuoka, S., Sugiyama, Y., Nagano, M., & Doi, H. (2022). Influence of DNA extraction kits on freshwater fungal DNA metabarcoding. PeerJ, 10, e13477. LINK
- 141.
- Kuwae, M., Finney, B. P., Shi, Z., Sakaguchi, A., Tsugeki, N., Omori, T., Agusa, T., Suzuki, Y., Yokoyama, Y., Hinata, H., Hatada, Y., Inoue, J., Matsuoka, K., Shimada, M., Takahara, H., Takahashi, S., Ueno, D., Amano, A., Tsutsumi, J., Yamamoto, M., Takemura, K., Yamada, K., Ikehara, K., Haraguchi, T., Tims, S., Froehlich, M., Fifield, L. K., Aze, T., Sasa, K., Takahashi, T., Matsumura, M., Tani, Y., Leavitt, P. R., Doi, H., Irino, T., Moriya, K., Hayashida, A., Hirose, K., Suzuki, H., & Saito, Y. (2022). Beppu Bay, Japan, as a candidate Global Boundaries Stratotype Section and Point for an Anthropocene series. The Anthropocene Review, 20530196221135077. LINK
- 140.
- Jo, T., Sato, M., Minamoto, T., & Ushimaru, A. (2022). Valuing the cultural services from urban blue-space ecosystems in Japanese megacities during the COVID‐19 pandemic. People and Nature, 4(5), 1176-1189. LINK
- 139.
- Jo, T. S., Tsuri, K., & Yamanaka, H. (2022). Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?. The Science of Nature, 109(4), 38. LINK
- 138.
- Jo, T. S. (2022). A higher DNA damage rate in aqueous eDNA particles suggests intra-cellular eDNA degradation in cellular environments. Environmental DNA, 5(2), 343-349. LINK
- 137.
- Fukuzawa, T., Kameda, Y., Nagata, H., Nishizawa, N., & Doi, H. (2022). Filtration extraction method using a microfluidic channel for measuring environmental DNA. Molecular Ecology Resources, 22(7), 2651-2661. LINK
- 136.
- Fujiwara, Y., Tsuchida, S., Kawato, M., Masuda, K., Sakaguchi, S. O., Sado, T., Miya, M., & Yoshida, T. (2022). Detection of the Largest Deep-Sea-Endemic Teleost Fish at Depths of Over 2,000 m Through a Combination of eDNA Metabarcoding and Baited Camera Observations. Frontiers in Marine Science, 9, 945758. LINK
- 135.
- Banerjee, P., Stewart, K. A., Dey, G., Antognazza, C. M., Sharma, R. K., Maity, J. P., Saha, S., Doi, H., de Vere, N., Chan, M. W.,, Lin, P. Y., Chao, H. C., & Chen, C. Y. (2022). Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review. AoB Plants, 14(4), plac031. LINK
- 134.
- Banerjee, P., Stewart, K. A., Antognazza, C. M., Bunholi, I. V., Deiner, K., Barnes, M. A., Saha, S., Verdier H., Doi, H., Maity, J. P., Chan, M. W., & Chen, C. Y. (2022). Plant–animal interactions in the era of environmental DNA (eDNA)—A review. Environmental DNA, 4(5), 987-999. LINK
- 133.
- Tsuji, S., Nakao, R., Saito, M., Minamoto, T., & Akamatsu, Y. (2022). Pre-centrifugation before DNA extraction mitigates extraction efficiency reduction of environmental DNA caused by the preservative solution (benzalkonium chloride) remaining in the filters. Limnology, 23(1), 9-16. LINK
- 132.
- Miya, M. (2022). Environmental DNA Metabarcoding: A novel method for biodiversity monitoring of marine fish communities. Annual Review of Marine Science, 14,161-185. LINK
- 131.
- Uchii, K., Wakimura, K., Kikko, T., Yonekura, R., Kawaguchi, R., Komada, H., Yamanaka, H., Kenzaka, T., & Tani, K. (2022). Environmental DNA monitoring method of the commercially important and endangered fish Gnathopogon caerulescens Limnology, 23(1), 49-56. LINK
- 130.
- Jo, T., Takao, K., & Minamoto, T. (2022). Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes. Environmental DNA, 4(2), 271-283. LINK
- 129.
- de Santana, C. D., Parenti, L. R., Dillman, C. B., Coddington, J. A., Bastos, D. A., Baldwin, C. C., Zuanon, J., Torrente-Vilara, G., Covain, R., Menezes, N, A., Datovo, A., & Miya, M. (2021). The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes. Scientific reports, 11(1), 1-22. LINK
- 128.
- Yoneya, K., Miki, T., Van den Wyngaert, S., Grossart, H. P., & Kagami, M. (2021). Non-random patterns of chytrid infections on phytoplankton host cells: mathematical and chemical ecology approaches. Aquatic Microbial Ecology, 87,1-15. LINK
- 127.
- Yasashimoto, T., Sakata, M. K., Sakita, T., Nakajima, S., Ozaki, M., & Minamoto, T. (2021). Environmental DNA detection of an invasive ant species (Linepithema humile) from soil samples. Scientific reports, 11(1), 1-12. LINK
- 126.
- Wu, Q., Sakata, M. K., Wu, D., Yamanaka, H., & Minamoto, T. (2021). Application of environmental DNA metabarcoding in a lake with extensive algal blooms. Limnology, 22(3), 363-370. LINK
- 125.
- Tenma, H., Tsunekawa, K., Fujiyoshi, R., Takai, H., Hirose, M., Masai, N., Sumi, K., Takihana, Y., Yanagisawa, S., Tsuchida, K., Ohara, K., Jo, T.,Takagi, M., Ota, A., Iwata. H., Yaoi, Y., & Minamoto, T. (2021). Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis. Fisheries science, 87(3), 321-330. LINK
- 124.
- Takasaki, K., Aihara, H., Imanaka, T., Matsudaira, T., Tsukahara, K., Usui, A., Osaki, S., & Doi, H. (2021). Water pre-filtration methods to improve environmental DNA detection by real-time PCR and metabarcoding. Plos one, 16(5), e0250162. LINK
- 123.
- Takahashi, S., Takada, S., Yamanaka, H., Masuda, R., & Kasai, A. (2021). Intraspecific genetic variability and diurnal activity affect environmental DNA detection in Japanese eel. PloS one, 16(9), e0255576. LINK
- 122.
- Saito, T., & Doi, H. (2021). Degradation modeling of water environmental DNA: Experiments on multiple DNA sources in pond and seawater. Environmental DNA, 3(4), 850-860. LINK
- 121.
- Saito, T., & Doi, H. (2021). A model and simulation of the influence of temperature and amplicon length on environmental DNA degradation rates: a meta-analysis approach. Frontiers in Ecology and Evolution, 9,623831. LINK
- 120.
- Rodriguez‐Ezpeleta, N., Morissette, O., Bean, C. W., Manu, S., Banerjee, P., Lacoursière‐Roussel, A., Beng, K, C., Elizabeth Alter, S., Roger, F., Holman, L, E., Stewart, K, A., Monaghan, M, T., Mauvisseau, Q., Mirimin, L., Wangensteen, O, S., Antognazza, C, M., Helyar, S, J., de Boer, H., Monchamp, M. E., Nijland, R., Abbott, C. L., Doi, H., Barnes, M, A., Leray, M., Hablützel, P. I., & Deiner, K. (2021). Trade‐offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What’s behind the term?” by Pawlowski et al.,(2020). Molecular Ecology, 30(19), 4601-4605. LINK
- 119.
- Osathanunkul, M., & Minamoto, T. (2021). eDNA‐based detection of a vulnerable crocodile newt (Tylototriton uyenoi) to influence government policy and raise public awareness. Diversity and Distributions, 27(10), 1958-1965. LINK
- 118.
- Osathanunkul, M., & Minamoto, T. (2021). Molecular detection of giant snakeheads, Channa micropeltes (Cuvier, 1831), one of the most troublesome fish species. Scientific Reports, 11(1), 1-7. LINK
- 117.
- Ogata, M., Masuda, R., Harino, H., Sakata, M. K., Hatakeyama, M., Yokoyama, K., Yamashita, Y., & Minamoto, T. (2021). Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami. Scientific Reports, 11(1), 1-14. LINK
- 116.
- Nakao, R., Inui, R., Akamatsu, Y., Goto, M., Doi, H., & Matsuoka, S. (2021). Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding. Scientific reports, 11(1), 1-10. LINK
- 115.
- Matsuoka, S., Sugiyama, Y., Shimono, Y., Ushio, M., & Doi, H. (2021). Evaluation of seasonal dynamics of fungal DNA assemblages in a flow‐regulated stream in a restored forest using eDNA metabarcoding. Environmental Microbiology, 23(8), 4797-4806. LINK
- 114.
- Jo, T., Sakata, M. K., Murakami, H., Masuda, R., & Minamoto, T. (2021). Universal performance of benzalkonium chloride for the preservation of environmental DNA in seawater samples. Limnology and Oceanography: Methods, 19(11), 758-768. LINK
- 113.
- Jo, T., & Minamoto, T. (2021). Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses. Molecular Ecology Resources, 21(5), 1490-1503. LINK
- 112.
- Hirohara, T., Tsuri, K., Miyagawa, K., Paine, R. T., & Yamanaka, H. (2021). The application of PMA (propidium monoazide) to different target sequence lengths of Zebrafish eDNA: a new approach aimed toward improving environmental DNA ecology and biological surveillance. Frontiers in Ecology and Evolution, 277. LINK
- 111.
- Fukuda, A., Usui, M., Ushiyama, K., Shrestha, D., Hashimoto, N., Sakata, M. K., Minamoto, T., Yoshida, O., Murakami, K., Tamura, Y., & Asai, T. (2021). Prevalence of antimicrobial-resistant Escherichia coli in migratory greater white-fronted geese (Anser albifrons) and their habitat in Miyajimanuma, Japan. The Journal of Wildlife Diseases, 57(4), 954-958. LINK
- 110.
- Fukaya, K., Murakami, H., Yoon, S., Minami, K., Osada, Y., Yamamoto, S., Masuda, R., Kasai, A., Miyashita, K., Minamoto, T., & Kondoh, M. (2021). Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modelling. Molecular Ecology, 30(13), 3057-3067. LINK
- 109.
- Doi, H., Watanabe, T., Nishizawa, N., Saito, T., Nagata, H., Kameda, Y., Maki, N., Ikeda, K., & Fukuzawa, T. (2021). On‐site environmental DNA detection of species using ultrarapid mobile PCR. Molecular Ecology Resources, 21(7), 2364-2368. LINK
- 108.
- Doi, H., Inui, R., Matsuoka, S., Akamatsu, Y., Goto, M., & Kono, T. (2021). Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities. Freshwater Biology, 66(7), 1257-1266. LINK
- 107.
- Deiner, K., Yamanaka, H., & Bernatchez, L. (2021). The future of biodiversity monitoring and conservation utilizing environmental DNA. Environmental DNA, 3(1), 3-7. LINK
- 106.
- Cheung, P. Y., Nozawa, Y., & Miki, T. (2021). Ecosystem engineering structures facilitate ecological resilience: A coral reef model. Ecological Research, 36(4), 673-685. LINK
- 105.
- Chang, C. W., Miki, T., Ushio, M., Ke, P. J., Lu, H. P., Shiah, F. K., & Hsieh, C. H. (2021). Reconstructing large interaction networks from empirical time series data. Ecology Letters, 24(12), 2763-2774. LINK
- 104.
- Kasai, A., Yamazaki, A., Ahn, H., Yamanaka, H., Kameyama, S., Masuda, R., Azuma, N., Kimura, S., Karaki, T., Kurokawa, Y., & Yamashita, Y. (2021). Distribution of Japanese eel Anguilla japonica revealed by environmental DNA. Frontiers Ecology And Evolution, 9, 83. LINK
- 103.
- Wada, K., Kishimoto, N., Somiya, I., Sato, T., & Ueno, K. (2021). Impact of Submerged Macrophytes on Behavior of Organic Carbon and Nutrients: An Experimental Study. Journal of Water and Environment Technology, 19(1), 35-47. LINK
- 102.
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