査読付き学術論文

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195.

Oyabu, A., Wu, L., Matsumoto, T., Kihara, N., Yamanaka, H., & Minamoto, T. (2024). The effect of artificial light at night on wild fish community: manipulative field experiment and species composition analysis using environmental DNA. Environmental Advances, 15, 100457. LINK

194.

Sugiyama, Y., Matsuoka, S., Shimono, Y., Ushio, M., & Doi, H. (2024). Do aquatic fungal environmental DNA assemblages reflect the surrounding terrestrial sporocarp communities?. Fungal Ecology, 67, 101311. LINK

193.

Zhu, M., Kuroki, M., Kobayashi, T., Yamakawa, T., Sado, T., Kodama, K., Horiguchi, T., & Miya, M. (2023). Comparison of fish fauna evaluated using aqueous eDNA, sedimentary eDNA, and catch surveys in Tokyo Bay, Central Japan. Journal of Marine Systems, 240, 103886. LINK

192.

Kawakami, T., Yamazaki, A., Asami, M., Goto, Y., Yamanaka, H., Hyodo, S., Ueno, H., & Kasai, A. (2023). Evaluating the sampling effort for the metabarcoding-based detection of fish environmental DNA in the open ocean. Ecology and evolution, 13(3), e9921. LINK

191.

Zhu, T., Sato, Y., Sado, T., Miya, M., & Iwasaki, W. (2023). MitoFish, MitoAnnotator, and MiFish pipeline: updates in 10 years. Molecular Biology and Evolution, 40(3), msad035. LINK

190.

Miki, T., Yamanaka, H., Sogabe, A., Omori, K., Saito, Y., Minamoto, T., Uchii, K., Honjo, M. N., Suzuki, A. A., Kohmatsu, Y., & Kawabata, Z. I. (2023). Spatial epidemiology model can explain the seasonal dynamics of infectious disease Cyprinid herpesvirus 3 (CyHV-3) by thermoregulation behavior of the host, common carp (Cyprinus carpio). Theoretical Ecology, 16(3), 195-208. LINK

189.

Kanbe, T., Mizumoto, H., Mitsuzuka, T., Nakajima, N., & Araki, H. (2023). Co-occurrence patterns of endangered Sakhalin taimen and introduced rainbow trout in Hokkaido, Japan, inferred by environmental DNA metabarcoding. Aquatic Conservation: Marine and Freshwater Ecosystems, 33(12), 1492-1500. LINK

188.

Fukuzawa, T., Shirakura, H., Nishizawa, N., Nagata, H., Kameda, Y., & Doi, H. (2023). Environmental DNA extraction method from water for a high and consistent DNA yield. Environmental DNA, 5(4), 627-633. LINK

187.

von der Heyden, S., Neef, G., Grevesse, T., Cwecwe, Y., Sado, T., Miya, M., Mosie, I., Creer, S., Skelton, P., & von Brandis, R. (2023). Environmental DNA biomonitoring in biodiversity hotspots: A case study of fishes of the Okavango Delta. Environmental DNA, 5(6), 1720-1731. LINK

186.

Nishizawa, R., Nakao, R., Ushimaru, A., & Minamoto, T. (2023). Development of environmental DNA detection assays for snakes in paddy fields in Japan. Landscape and Ecological Engineering, 19(1), 3-10. LINK

185.

Souma, R., Katano, I., Doi, H., Takahara, T., & Minamoto, T. (2023). Comparing environmental DNA with whole pond survey to estimate the total biomass of fish species in ponds. Freshwater Biology, 68(5), 727-736. LINK

184.

Wu, Q., & Minamoto, T. (2023). Improvement of recovery yield of macro-organismal environmental DNA from seawater samples. Analytical Sciences, 39(5), 713-720. LINK

183.

Wu, Q., Zhou, J., Komoto, T., Ishikawa, T., Goto, N., Sakata, M. K., Kitazawa, D., & Minamoto, T. (2023). Opposite trends in environmental DNA distributions of two freshwater species under climate change. Ecosphere, 14(9), e4651. LINK

182.

Yano, N., Minamoto, T., Yamaguchi, H., Goto, T., & Nishikata, T. (2023). Comparison of Evolutionary Relationships between Branchiostoma floridae, Ciona intestinalis, and Homo sapiens Globins Provide Evidence of Gene Co-Option and Convergent Evolution. International Journal of Molecular Sciences, 24(21), 16009. LINK

181.

Ushio, M., Sado, T., Fukuchi, T., Sasano, S., Masuda, R., Osada, Y., & Miya, M. (2023). Temperature sensitivity of the interspecific interaction strength of coastal marine fish communities. ELife, 12. LINK

180.

Sakata, M. K., Takeshita, D., Nishizawa, R., Sato, T., & Minamoto, T. (2023). An efficient environmental DNA detection method for rare species: a case study of a small salamander (Hynobius boulengeri). Analytical Sciences, 39(5), 721-728. LINK

179.

Okanishi, M., Kohtsuka, H., Wu, Q., Shinji, J., Shibata, N., Tamada, T., Nakano, T., & Minamoto, T. (2023). Development of two new sets of PCR primers for eDNA metabarcoding of brittle stars (Echinodermata, Ophiuroidea). Metabarcoding and Metagenomics, 7, 51-72. LINK

178.

Yoneya, K., Miki, T., & Takabayashi, J. (2023). Initial herbivory and exposure to herbivory-induced volatiles enhance arthropod species richness by diversifying community assemblages. Frontiers in Ecology and Evolution, 10, 1031664. LINK

177.

Yoneya, K., Ushio, M., & Miki, T. (2023). Non-destructive collection and metabarcoding of arthropod environmental DNA remained on a terrestrial plant. Scientific Reports, 13(1), 7125. LINK

176.

Mori, K., Imamura, A., Hirayama, I., & Minamoto, T. (2023). Detection of Echinococcus multilocularis in repurposed environmental DNA samples from river water. PeerJ, 11, e15431. LINK

175.

Yoshitake, K., Yanagisawa, K., Sugimoto, Y., Nakamura, H., Mizusawa, N., Miya, M., Hamasaki, K., Kobayashi, T., Watabe, S., Nishikiori, K., & Asakawa, S. (2023). Pilot study of a comprehensive resource estimation method from environmental DNA using universal D-loop amplification primers. Functional & Integrative Genomics, 23(2), 96. LINK

174.

Nakane, K., Liu, X., Doi, H., Dur, G., Kuwae, M., Ban, S., & Tsugeki, N. (2023). Sedimentary DNA can reveal the past population dynamics of a pelagic copepod. Freshwater Biology, 68(11), 1917-1928. LINK

173.

Aoshima, I., Nakao, R., Minamoto, T., Ushimaru, A., & Sato, M. (2023). Heterogeneous preference for biodiversity in Japanese urban blue spaces based on people’s nature experiences: Analysis using eDNA and satisfaction data. City and Environment Interactions, 18, 100101. LINK

172.

Doi, H., Matsuoka, S., Matsuzaki, S. I. S., Nagano, M., Sato, H., Yamanaka, H., Matsuhashi, S., Yamamoto, S., Minamoto, T., Araki, H., Ikeda, K., Kato, A., Kumei, K., Maki, N., Mitsuzuka, T., Takahara, T., Toki, K., Ueda, N., Watanabe, T., Yamazoe, K., & Miya, M. (2023). Species traits and ecosystem characteristics affect species detection by eDNA metabarcoding in lake fish communities. Freshwater Biology, 68(8), 1346-1358. LINK

171.

Doi, H., & Kelly, R. P. (2023). Ethical considerations for human sequences in environmental DNA. Nature Ecology & Evolution, 7(9), 1334-1335. LINK

170.

Doi, H., & Nakamura, K. (2023). Dominant barriers and the solutions to the social application of environmental DNA. Landscape and Ecological Engineering, 19(2), 305-312. LINK

169.

Huston, G. P., Lopez, M. L. D., Cheng, Y., King, L., Duxbury, L. C., Picard, M., Thomson-Laing, G., Myler, E., Helbing, C. C., Kinnison, M. T., Saros, J. E., Gregory-Eaves, I., Monchamp, M. E., Wood, S. A., Armbrecht, L., Ficetola, G. F., Kurte, L., Von Eggers, J., Brahney, J.,  Parent, G., Sakata, M. K., Doi, H., & Capo, E. (2023). Detection of fish sedimentary DNA in aquatic systems: A review of methodological challenges and future opportunities. Environmental DNA, 5(6), 1449-1472. LINK

168.

Ito, G., Yamauchi, H., Shigeyoshi, M., Ashino, K., Yonashiro, C., Asami, M., Goto, Y., Duda, J. J., & Yamanaka, H. (2023). Using eDNA metabarcoding to establish targets for freshwater fish composition following river restoration. Global Ecology and Conservation, 43, e02448. LINK

167.

Sakata, A., Sado, T., Oka, S. I., Ushio, M., & Miya, M. (2023). Collection of environmental DNA from stemflow for monitoring arboreal biodiversity: Preliminary validation using lichens. MethodsX, 11, 102448. LINK

166.

Tanaka, A., Katano, I., Doi, H., Iguchi, M., & Koike, S. (2023). Applicability of environmental DNA metabarcoding for the hyporheic zone of a stream bed. Environmental DNA, 5(6), 1667-1678. LINK

165.

Wu, L., Wu, Q., Inagawa, T., Okitsu, J., Sakamoto, S., & Minamoto, T. (2023). Estimating the spawning activity of fish species using nuclear and mitochondrial environmental DNA concentrations and their ratios. Freshwater Biology, 68(1), 103-114. LINK

164.

Jo, T. S. (2023). Correlation between the number of eDNA particles and species abundance is strengthened by warm temperature: simulation and meta-analysis. Hydrobiologia, 850(1), 39-50. LINK

163.

Takahara, T., Doi, H., Kosuge, T., Nomura, N., Maki, N., Minamoto, T., & Watanabe, K. (2023). Effective environmental DNA collection for an endangered catfish species: testing for habitat and daily periodicity. Ichthyological Research, 70(4), 409-418. LINK

162.

Takahara, T., Fukui, K., Hiramatsu, D., Doi, H., Fujii, M., & Minamoto, T. (2023). Development of primer–probe sets for environmental DNA-based monitoring of pond smelt Hypomesus nipponensis and Japanese icefish Salangichthys microdon. Landscape and Ecological Engineering, 19(1), 11-19. LINK

161.

Ogata, S., Nishiwaki, A., Yamazoe, K., Sugai, K., & Takahara, T. (2023). Discovery of unknown new ponds occupied by the endangered giant water bug Kirkaldyia deyrolli (Hemiptera: Heteroptera: Belostomatidae) by combining environmental DNA and capture surveys. Entomological Science, 26(1), e12540. LINK

160.

Ogata, S., Doi, H., Igawa, T., Komaki, S., & Takahara, T. (2023). Environmental DNA methods for detecting two invasive alien species (American bullfrog and red swamp crayfish) in Japanese ponds. Ecological Research, 37(6), 701-710. LINK

159.

Ito, G., & Koya, Y. (2022). Phylogeographic structure of an endemic lineage of the eight-barbel loach Lefua echigonia around the Suzuka and Yoro Mountains, central Honshu, Japan. Biogeography, 24, 39-45.LINK

158.

Wu, L., Yamamoto, Y., Yamaguchi, S., & Minamoto, T. (2022). Spatiotemporal changes in environmental DNA concentrations caused by fish spawning activity. Ecological Indicators, 142, 109213. LINK

157.

Wakiya, R., Itakura, H., Hirae, T., Igari, T., Manabe, M., Matsuya, N., Sakata, M.K., Minamoto, T., Yada, T., & Kaifu, K. (2022). Slower growth of farmed eels stocked into rivers with higher wild eel density. Journal of Fish Biology, 101(3), 613-627. LINK

156.

Tsugeki, N., Nakane, K., Doi, H., Ochi, N., & Kuwae, M. (2022). Reconstruction of 100-year dynamics in Daphnia spawning activity revealed by sedimentary DNA. Scientific Reports, 12(1), 1741. LINK

155.

Jo, T., Tsuri, K., Hirohara, T., & Yamanaka, H. (2022). Warm temperature and alkaline conditions accelerate environmental RNA degradation. Environmental DNA. LINK

154.

Jo, T., & Yamanaka, H. (2022). Meta-analyses of environmental DNA downstream transport and deposition in relation to hydrogeography in riverine environments. Freshwater Biology, 67(8), 1333-1343. LINK

153.

Jo, T., & Yamanaka, H. (2022). Fine-tuning the performance of abundance estimation based on environmental DNA (eDNA) focusing on eDNA particle size and marker length. Ecology and Evolution, 12(8), e9234. LINK

152.

Asai, T., Sugiyama, M., Omatsu, T., Yoshikawa, M., & Minamoto, T. (2022). Isolation of extended-spectrum β-lactamase-producing Escherichia coli from Japanese red fox (Vulpes vulpes japonica). MicrobiologyOpen, 11(5), e1317. LINK

151.

Shiozuka, N., Katano, I., Doi, H., Nakamura, M., Shirako, T., & Ichiyanagi, H. (2022). Diurnal detection of environmental DNA of the semi-aquatic water shrew Chimarrogale platycephala using 25-h water sampling in streams. Landscape and Ecological Engineering, 19(1), 69-77. LINK

150.

Nagayama, S., Oota, M., Fujita, T., Kitamura, J. I., Minamoto, T., Mori, S., Kato, M., Takeyama, N., Takino, F., Yonekura, R., & Yamanaka, H. (2022). Autumn dispersal and limited success of reproduction of the deepbody bitterling (Acheilognathus longipinnis) in terrestrialized floodplain. Knowledge & Management of Aquatic Ecosystems, (423), 4. LINK

149.

Sakata, M. K., Sato, M., Sato, M. O., Watanabe, T., Mitsuishi, H., Hikitsuchi, T., Kobayashi, J., & Minamoto, T. (2022). Detection and persistence of environmental DNA (eDNA) of the different developmental stages of a vector mosquito, Culex pipiens pallens. Plos one, 17(8), e0272653. LINK

148.

Oka, S. I., Miya, M., & Sado, T. (2022). Gravity filtration of environmental DNA: A simple, fast, and power-free method. MethodsX, 9, 101838. LINK

147.

Nakagawa, H., Fukushima, K., Sakai, M., Wu, L., & Minamoto, T. (2022). Relationships between the eDNA concentration obtained from metabarcoding and stream fish abundance estimated by the removal method under field conditions. Environmental DNA, 4(6), 1369-1380. LINK

146.

Kimura, M., Yamanaka, H., & Nakashima, Y. (2022). Application of Machine Learning to Environmental DNA Metabarcoding. IEEE Access, 10, 101790-101794. LINK

145.

Miya, M., Sado, T., Oka, S. I., & Fukuchi, T. (2022). The use of citizen science in fish eDNA metabarcoding for evaluating regional biodiversity in a coastal marine region: A pilot study. Metabarcoding and Metagenomics, 6, e80444. LINK

144.

Miya, M. (2022). Environmental DNA metabarcoding: a novel method for biodiversity monitoring of marine fish communities. Annual Review of Marine Science, 14, 161-185. LINK

143.

Minamoto, T. (2022). Environmental DNA analysis for macro-organisms: species distribution and more. DNA Research, 29(3), dsac018. LINK

142.

Matsuoka, S., Sugiyama, Y., Nagano, M., & Doi, H. (2022). Influence of DNA extraction kits on freshwater fungal DNA metabarcoding. PeerJ, 10, e13477. LINK

141.

Kuwae, M., Finney, B. P., Shi, Z., Sakaguchi, A., Tsugeki, N., Omori, T., Agusa, T., Suzuki, Y., Yokoyama, Y., Hinata, H., Hatada, Y., Inoue, J., Matsuoka, K., Shimada, M., Takahara, H., Takahashi, S., Ueno, D., Amano, A., Tsutsumi, J., Yamamoto, M., Takemura, K., Yamada, K., Ikehara, K., Haraguchi, T., Tims, S., Froehlich, M., Fifield, L. K., Aze, T., Sasa, K., Takahashi, T., Matsumura, M., Tani, Y., Leavitt, P. R., Doi, H., Irino, T., Moriya, K., Hayashida, A., Hirose, K., Suzuki, H., & Saito, Y. (2022). Beppu Bay, Japan, as a candidate Global Boundaries Stratotype Section and Point for an Anthropocene series. The Anthropocene Review, 20530196221135077. LINK

140.

Jo, T., Sato, M., Minamoto, T., & Ushimaru, A. (2022). Valuing the cultural services from urban blue-space ecosystems in Japanese megacities during the COVID‐19 pandemic. People and Nature, 4(5), 1176-1189. LINK

139.

Jo, T. S., Tsuri, K., & Yamanaka, H. (2022). Can nuclear aquatic environmental DNA be a genetic marker for the accurate estimation of species abundance?. The Science of Nature, 109(4), 38. LINK

138.

Jo, T. S. (2022). A higher DNA damage rate in aqueous eDNA particles suggests intra-cellular eDNA degradation in cellular environments. Environmental DNA, 5(2), 343-349. LINK

137.

Fukuzawa, T., Kameda, Y., Nagata, H., Nishizawa, N., & Doi, H. (2022). Filtration extraction method using a microfluidic channel for measuring environmental DNA. Molecular Ecology Resources, 22(7), 2651-2661. LINK

136.

Fujiwara, Y., Tsuchida, S., Kawato, M., Masuda, K., Sakaguchi, S. O., Sado, T., Miya, M., & Yoshida, T. (2022). Detection of the Largest Deep-Sea-Endemic Teleost Fish at Depths of Over 2,000 m Through a Combination of eDNA Metabarcoding and Baited Camera Observations. Frontiers in Marine Science, 9, 945758. LINK

135.

Banerjee, P., Stewart, K. A., Dey, G., Antognazza, C. M., Sharma, R. K., Maity, J. P., Saha, S., Doi, H., de Vere, N., Chan, M. W.,, Lin, P. Y., Chao, H. C., & Chen, C. Y. (2022). Environmental DNA analysis as an emerging non-destructive method for plant biodiversity monitoring: a review. AoB Plants, 14(4), plac031. LINK

134.

Banerjee, P., Stewart, K. A., Antognazza, C. M., Bunholi, I. V., Deiner, K., Barnes, M. A., Saha, S., Verdier H., Doi, H., Maity, J. P., Chan, M. W., & Chen, C. Y. (2022). Plant–animal interactions in the era of environmental DNA (eDNA)—A review. Environmental DNA, 4(5), 987-999. LINK

133.

Tsuji, S., Nakao, R., Saito, M., Minamoto, T., & Akamatsu, Y. (2022). Pre-centrifugation before DNA extraction mitigates extraction efficiency reduction of environmental DNA caused by the preservative solution (benzalkonium chloride) remaining in the filters. Limnology, 23(1), 9-16. LINK

132.

Miya, M. (2022). Environmental DNA Metabarcoding: A novel method for biodiversity monitoring of marine fish communities. Annual Review of Marine Science, 14,161-185. LINK

131.

Uchii, K., Wakimura, K., Kikko, T., Yonekura, R., Kawaguchi, R., Komada, H., Yamanaka, H., Kenzaka, T., & Tani, K. (2022). Environmental DNA monitoring method of the commercially important and endangered fish Gnathopogon caerulescens Limnology, 23(1), 49-56. LINK

130.

Jo, T., Takao, K., & Minamoto, T. (2022). Linking the state of environmental DNA to its application for biomonitoring and stock assessment: Targeting mitochondrial/nuclear genes, and different DNA fragment lengths and particle sizes. Environmental DNA, 4(2), 271-283. LINK

129.

de Santana, C. D., Parenti, L. R., Dillman, C. B., Coddington, J. A., Bastos, D. A., Baldwin, C. C., Zuanon, J., Torrente-Vilara, G., Covain, R., Menezes, N, A., Datovo, A., & Miya, M. (2021). The critical role of natural history museums in advancing eDNA for biodiversity studies: a case study with Amazonian fishes. Scientific reports, 11(1), 1-22. LINK

128.

Yoneya, K., Miki, T., Van den Wyngaert, S., Grossart, H. P., & Kagami, M. (2021). Non-random patterns of chytrid infections on phytoplankton host cells: mathematical and chemical ecology approaches. Aquatic Microbial Ecology, 87,1-15. LINK

127.

Yasashimoto, T., Sakata, M. K., Sakita, T., Nakajima, S., Ozaki, M., & Minamoto, T. (2021). Environmental DNA detection of an invasive ant species (Linepithema humile) from soil samples. Scientific reports, 11(1), 1-12. LINK

126.

Wu, Q., Sakata, M. K., Wu, D., Yamanaka, H., & Minamoto, T. (2021). Application of environmental DNA metabarcoding in a lake with extensive algal blooms. Limnology, 22(3), 363-370. LINK

125.

Tenma, H., Tsunekawa, K., Fujiyoshi, R., Takai, H., Hirose, M., Masai, N., Sumi, K., Takihana, Y., Yanagisawa, S., Tsuchida, K., Ohara, K., Jo, T.,Takagi, M., Ota, A., Iwata. H., Yaoi, Y., & Minamoto, T. (2021). Spatiotemporal distribution of Flavobacterium psychrophilum and ayu Plecoglossus altivelis in rivers revealed by environmental DNA analysis. Fisheries science, 87(3), 321-330. LINK

124.

Takasaki, K., Aihara, H., Imanaka, T., Matsudaira, T., Tsukahara, K., Usui, A., Osaki, S., & Doi, H. (2021). Water pre-filtration methods to improve environmental DNA detection by real-time PCR and metabarcoding. Plos one, 16(5), e0250162. LINK

123.

Takahashi, S., Takada, S., Yamanaka, H., Masuda, R., & Kasai, A. (2021). Intraspecific genetic variability and diurnal activity affect environmental DNA detection in Japanese eel. PloS one, 16(9), e0255576. LINK

122.

Saito, T., & Doi, H. (2021). Degradation modeling of water environmental DNA: Experiments on multiple DNA sources in pond and seawater. Environmental DNA, 3(4), 850-860. LINK

121.

Saito, T., & Doi, H. (2021). A model and simulation of the influence of temperature and amplicon length on environmental DNA degradation rates: a meta-analysis approach. Frontiers in Ecology and Evolution, 9,623831. LINK

120.

Rodriguez‐Ezpeleta, N., Morissette, O., Bean, C. W., Manu, S., Banerjee, P., Lacoursière‐Roussel, A., Beng, K, C., Elizabeth Alter, S., Roger, F., Holman, L, E., Stewart, K, A., Monaghan, M, T., Mauvisseau, Q., Mirimin, L., Wangensteen, O, S., Antognazza, C, M., Helyar, S, J., de Boer, H., Monchamp, M. E., Nijland, R., Abbott, C. L., Doi, H., Barnes, M, A., Leray, M., Hablützel, P. I., & Deiner, K. (2021). Trade‐offs between reducing complex terminology and producing accurate interpretations from environmental DNA: Comment on “Environmental DNA: What’s behind the term?” by Pawlowski et al.,(2020). Molecular Ecology, 30(19), 4601-4605. LINK

119.

Osathanunkul, M., & Minamoto, T. (2021). eDNA‐based detection of a vulnerable crocodile newt (Tylototriton uyenoi) to influence government policy and raise public awareness. Diversity and Distributions, 27(10), 1958-1965. LINK

118.

Osathanunkul, M., & Minamoto, T. (2021). Molecular detection of giant snakeheads, Channa micropeltes (Cuvier, 1831), one of the most troublesome fish species. Scientific Reports, 11(1), 1-7. LINK

117.

Ogata, M., Masuda, R., Harino, H., Sakata, M. K., Hatakeyama, M., Yokoyama, K., Yamashita, Y., & Minamoto, T. (2021). Environmental DNA preserved in marine sediment for detecting jellyfish blooms after a tsunami. Scientific Reports, 11(1), 1-14. LINK

116.

Nakao, R., Inui, R., Akamatsu, Y., Goto, M., Doi, H., & Matsuoka, S. (2021). Illumina iSeq 100 and MiSeq exhibit similar performance in freshwater fish environmental DNA metabarcoding. Scientific reports, 11(1), 1-10. LINK

115.

Matsuoka, S., Sugiyama, Y., Shimono, Y., Ushio, M., & Doi, H. (2021). Evaluation of seasonal dynamics of fungal DNA assemblages in a flow‐regulated stream in a restored forest using eDNA metabarcoding. Environmental Microbiology, 23(8), 4797-4806. LINK

114.

Jo, T., Sakata, M. K., Murakami, H., Masuda, R., & Minamoto, T. (2021). Universal performance of benzalkonium chloride for the preservation of environmental DNA in seawater samples. Limnology and Oceanography: Methods, 19(11), 758-768. LINK

113.

Jo, T., & Minamoto, T. (2021). Complex interactions between environmental DNA (eDNA) state and water chemistries on eDNA persistence suggested by meta‐analyses. Molecular Ecology Resources, 21(5), 1490-1503. LINK

112.

Hirohara, T., Tsuri, K., Miyagawa, K., Paine, R. T., & Yamanaka, H. (2021). The application of PMA (propidium monoazide) to different target sequence lengths of Zebrafish eDNA: a new approach aimed toward improving environmental DNA ecology and biological surveillance. Frontiers in Ecology and Evolution, 277. LINK

111.

Fukuda, A., Usui, M., Ushiyama, K., Shrestha, D., Hashimoto, N., Sakata, M. K., Minamoto, T., Yoshida, O., Murakami, K., Tamura, Y., & Asai, T. (2021). Prevalence of antimicrobial-resistant Escherichia coli in migratory greater white-fronted geese (Anser albifrons) and their habitat in Miyajimanuma, Japan. The Journal of Wildlife Diseases, 57(4), 954-958. LINK

110.

Fukaya, K., Murakami, H., Yoon, S., Minami, K., Osada, Y., Yamamoto, S., Masuda, R., Kasai, A., Miyashita, K., Minamoto, T., & Kondoh, M. (2021). Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modelling. Molecular Ecology, 30(13), 3057-3067. LINK

109.

Doi, H., Watanabe, T., Nishizawa, N., Saito, T., Nagata, H., Kameda, Y., Maki, N., Ikeda, K., & Fukuzawa, T. (2021). On‐site environmental DNA detection of species using ultrarapid mobile PCR. Molecular Ecology Resources, 21(7), 2364-2368. LINK

108.

Doi, H., Inui, R., Matsuoka, S., Akamatsu, Y., Goto, M., & Kono, T. (2021). Estimation of biodiversity metrics by environmental DNA metabarcoding compared with visual and capture surveys of river fish communities. Freshwater Biology, 66(7), 1257-1266. LINK

107.

Deiner, K., Yamanaka, H., & Bernatchez, L. (2021). The future of biodiversity monitoring and conservation utilizing environmental DNA. Environmental DNA, 3(1), 3-7. LINK

106.

Cheung, P. Y., Nozawa, Y., & Miki, T. (2021). Ecosystem engineering structures facilitate ecological resilience: A coral reef model. Ecological Research, 36(4), 673-685. LINK

105.

Chang, C. W., Miki, T., Ushio, M., Ke, P. J., Lu, H. P., Shiah, F. K., & Hsieh, C. H. (2021). Reconstructing large interaction networks from empirical time series data. Ecology Letters, 24(12), 2763-2774. LINK

104.

Kasai, A., Yamazaki, A., Ahn, H., Yamanaka, H., Kameyama, S., Masuda, R., Azuma, N., Kimura, S., Karaki, T., Kurokawa, Y., & Yamashita, Y. (2021). Distribution of Japanese eel Anguilla japonica revealed by environmental DNA. Frontiers Ecology And Evolution, 9, 83. LINK

103.

Wada, K., Kishimoto, N., Somiya, I., Sato, T., & Ueno, K. (2021). Impact of Submerged Macrophytes on Behavior of Organic Carbon and Nutrients: An Experimental Study. Journal of Water and Environment Technology, 19(1), 35-47. LINK

102.

Tsuri, K., Ikeda, S., Hirohara, T., Shimada, Y., Minamoto, T., & Yamanaka, H. (2021). Messenger RNA typing of environmental RNA (eRNA): A case study on zebrafish tank water with perspectives for the future development of eRNA analysis on aquatic vertebrates. Environmental DNA, 3(1), 14-21. LINK

101.

Tomaru, Y., Yamaguchi, H., & Miki, T. (2021). Growth Rate-dependent Cell Death of Diatoms due to Viral Infection and Their Subsequent Coexistence in a Semi-continuous Culture System. Microbes and Environments, 36(1), ME20116. LINK

100.

Minamoto, T., Miya, M., Sado, T., Seino, S., Doi, H., Kondoh, M., Nakamura, K., Takahara, T., Yamamoto, S., Yamanaka, H., Araki, H., Iwasaki, W., Kasai, A., Masuda, R., Uchii, K. (2021). An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols. Environmental DNA, 3(1), 8-13. LINK

99.

Jo, T.,Ikeda, S., Fukuoka, A., Inagawa, T., Okitsu, J.,Katano, I.,Doi, H.,Nakai, K.,Ichiyanagi,H.,& Minamoto,T. (2021) Utility of environmental DNA analysis for effective monitoring of invasive fish species in reservoirs. Ecosphere, 12, e03643. LINK

98.

Hoshino, T., Nakao, R., Doi, H., & Minamoto, T. (2021). Simultaneous absolute quantification and sequencing of fish environmental DNA in a mesocosm by quantitative sequencing technique. Scientific reports, 11, 4372. LINK

97.

Doi, H., Minamoto, T., Takahara, T., Tsuji, S., Uchii, K., Yamamoto, S., Katano, I.,& Yamanaka, H. (2021). Compilation of real-time PCR conditions toward the standardization of eDNA methods. Ecological Research, 36(3), 379-388. LINK

96.

Chen, J., Chen, Z., Liu, S., Guo, W., Li, D., Minamoto, T., & Gao, T. (2021). Revealing an Invasion Risk of Fish Species in Qingdao Underwater World by Environmental DNA Metabarcoding. Journal of Ocean University of China, 20(1), 124-136. LINK

95.

Oka, S. I., Doi, H., Miyamoto, K., Hanahara, N., Sado, T., & Miya, M. (2021). Environmental DNA metabarcoding for biodiversity monitoring of a highly diverse tropical fish community in a coral reef lagoon: Estimation of species richness and detection of habitat segregation. Environmental DNA, 3(1), 55-69. LINK

94.

Okada, R., Tsuji, S., Shibata, N., Morita, K., Kitagawa, T., & Yamanaka, H. (2021). Environmental DNA analysis provides an overview of distribution patterns of two dojo loach species within the Naka-ikemi Wetland, Fukui Prefecture, Japan. Ichthyological Research, 68(1), 198-206. LINK

93.

Kawatsu, K., Ushio, M., Van Veen, F.J.K. & Kondoh, M. (2021). Are networks of trophic interactions sufficient for understanding the dynamics of multi-trophic communities? Analysis of a tri-trophic insect food-web time-series. Ecology Letters, 24(3) 543-552. LINK

92.

Doi, H., Akamatsu, Y., Goto, M., Inui, R., Komuro, T., Nagano, M., & Minamoto, T. (2021). Broad-scale detection of environmental DNA for an invasive macrophyte and the relationship between DNA concentration and coverage in rivers. Biological Invasions, 23(2), 507-520. LINK

91.

Suetsugu, K., Matsuoka, S., Shutoh, K., Okada, H., Taketomi, S., Onimaru, K., Tanabe, A. S., & Yamanaka, H. (2021). Mycorrhizal communities of two closely related species, Pyrola subaphylla and P. japonica, with contrasting degrees of mycoheterotrophy in a sympatric habitat. Mycorrhiza, 31, 219-229. LINK

90.

Sakata, M. K., Watanabe, T., Maki, N., Ikeda, K., Kosuge, T., Okada, H., Yamanaka, H., Sado, T., Miya, M., & Minamoto, T. (2021). Determining an effective sampling method for eDNA metabarcoding: a case study for fish biodiversity monitoring in a small, natural river. Limnology, 22, 221-235. LINK

89.

Yonezawa, S., Ushio, M., Yamanaka, H., Miya, M., Takayanagi, A., & Isagi, Y. (2020). Environmental DNA metabarcoding reveals the presence of a small, quick-moving, nocturnal water shrew in a forest stream. Conservation Genetics, 21(6), 1079-1084. LINK

88.

Yamamichi, M., Kyogoku, D., Iritani, R., Kobayashi, K., Takahashi, Y., Tsurui-Sato, K., Yamawo, A., Dobata, S., Tsuji, K., & Kondoh, M. (2020). Intraspecific adaptation load: a mechanism for species coexistence. Trends in Ecology & Evolution, 35(10), 897-907. LINK

87.

Wada, T., Doi, H., Togaki, D., Kaida, R., Nagano, M., Katano, I., Suzuki, M., Ohtani, T., & Mitsuhashi, H. (2020). Exploring a legendary giant squid: an environmental DNA approach. Marine Biology, 167(11), 1-6. LINK

86.

Tsuji, S., Maruyama, A., Miya, M., Ushio, M., Sato, H., Minamoto, T., & Yamanaka, H. (2020). Environmental DNA analysis shows high potential as a tool for estimating intraspecific genetic diversity in a wild fish population. Molecular ecology resources, 20(5), 1248-1258. LINK

85.

Takeshita, D., Terui, S., Ikeda, K., Mitsuzuka, T., Osathanunkul, M., & Minamoto, T. (2020). Projection range of eDNA analysis in marshes: a suggestion from the Siberian salamander (Salamandrella keyserlingii) inhabiting the Kushiro marsh, Japan. PeerJ, 8, e9764. LINK

84.

Takahashi, S., Sakata, M. K., Minamoto, T., & Masuda, R. (2020). Comparing the efficiency of open and enclosed filtration systems in environmental DNA quantification for fish and jellyfish. PloS one, 15(4), e0231718. LINK

83.

Takahara, T., Taguchi, J., Yamagishi, S., Doi, H., Ogata, S., Yamanaka, H., & Minamoto, T. (2020). Suppression of environmental DNA degradation in water samples associated with different storage temperature and period using benzalkonium chloride. Limnology and Oceanography: Methods, 18(8), 437-445. LINK

82.

Sugiura, K., Tomita, S., Minamoto, T., Mishina, T., Iwata, A., Abe, T., Yamamoto, S., & Watanabe, K. (2020). Characterizing the spatial and temporal occurrence patterns of the endangered botiid loach Parabotia curtus by environmental DNA analysis using a newly developed species-specific primer set. Ichthyological Research, 68, 152-157. LINK

81.

Sakata, M. K., Yamamoto, S., Gotoh, R. O., Miya, M., Yamanaka, H., & Minamoto, T. (2020). Sedimentary eDNA provides different information on timescale and fish species composition compared with aqueous eDNA. Environmental DNA, 2(4), 505-518. LINK

80.

Osathanunkul, M., & Minamoto, T. (2020). A molecular survey based on eDNA to assess the presence of a clown featherback (Chitala ornata) in a confined environment. PeerJ, 8, e10338. LINK

79.

Muchebve, E., Takayama, Y., Akatsuka, M., Ito, K., & Minamoto, T. (2020). Feasibility Study for Seagrass Beds Monitoring Using Environmental DNA. Journal of Japan Society of Civil Engineers, Ser. B2 (Coastal Engineering), 76(2), I_949-I_954. LINK

78.

Metelmann, S., Sakai, S., Kondoh, M., & Telschow, A. (2020). Evolutionary stability of plant–pollinator networks: efficient communities and a pollination dilemma. Ecology Letters, 23(12), 1747-1755. LINK

77.

Matsuoka,S., Doi, H., Masumoto, S., Kitagawa, R., Nishizawa, K., Tanaka, K., Hasegawa,M., Hobara, S., Osono, T., Mori, A., & Uchida M.(2020) Taxonomic, functional, and phylogenetic diversity of fungi in a forest-tundra ecotone in Quebec. Polar Science, 100594. LINK

76.

Kuwae, M., Tamai, H., Doi, H., Sakata, M. K., Minamoto, T., & Suzuki, Y. (2020). Sedimentary DNA tracks decadal-centennial changes in fish abundance. Communications biology, 3558. LINK

75.

Kudoh, A., Minamoto, T., & Yamamoto, S. (2020). Detection of herbivory: eDNA detection from feeding marks on leaves. Environmental DNA, 2(4), 627-634. LINK

74.

Kasai, A., Takada, S., Yamazaki, A., Masuda, R., & Yamanaka, H. (2020). The effect of temperature on environmental DNA degradation of Japanese eel. Fisheries Science, 86, 465-471. LINK

73.

Jo, T., Tomita, S., Kohmatsu, Y., Osathanunkul, M., Ushimaru, A., & Minamoto, T. (2020). Seasonal monitoring of Hida salamander Hynobius kimurae using environmental DNA with a genus-specific primer set. Endangered Species Research, 43, 341-352. LINK

72.

Jo, T., Murakami, H., Masuda, R., & Minamoto, T. (2020). Selective collection of long fragments of environmental DNA using larger pore size filter. Science of the Total Environment, 735, 139462. LINK

71.

Itakura, H., Wakiya, R., Sakata, M. K., Hsu, H. Y., Chen, S. C., Yang, C. C., Huang, Y. C., Han, Y. S., Yamamoto, S., & Minamoto, T. (2020). Estimations of riverine distribution, abundance, and biomass of Anguillid Eels in Japan and Taiwan using environmental DNA analysis. Zoological studies, 59, e17. LINK

70.

Imamura, A., Hayami, K., Sakata, M. K., & Minamoto, T. (2020). Environmental DNA revealed the fish community of Hokkaido Island, Japan, after invasion by rainbow trout. Biodiversity data journal, 8, e56876. LINK

69.

Hoshino, T., Doi, H., Uramoto, G. I., Wörmer, L., Adhikari, R. R., Xiao, N., Morono, Y., D’Hondt, S., Hinrichs, K. U., & Inagaki, F. (2020). Global diversity of microbial communities in marine sediment. Proceedings of the National Academy of Sciences, 117(44), 27587-27597. LINK

68.

Hayami, K., Sakata, M. K., Inagawa, T., Okitsu, J., Katano, I., Doi, H., Nakai, K., Ichiyanagi, H., Gotoh, R. O., Miya, M., Sato, H., Yamanaka, H., & Minamoto, T. (2020). Effects of sampling seasons and locations on fish environmental DNA metabarcoding in dam reservoirs. Ecology and evolution, 10(12), 5354-5367. LINK

67.

Fukaya, K., Murakami, H., Yoon, S., Minami, K., Osada, Y., Yamamoto, S., Masuda, R., Kasai, A., Miyashita, K., Minamoto, T., & Kondoh, M. (2020). Estimating fish population abundance by integrating quantitative data on environmental DNA and hydrodynamic modelling. Molecular ecology. LINK

66.

Chen, Z., Minamoto, T., Lin, L., & Gao, T. (2020). An optional low-cost method of extracting environmental DNA of macro-organisms from filter membranes in large scale eDNA surveys. Pakistan Journal of Zoology, 53(1), 263-272. LINK

65.

Chang, C. W., Ye, H., Miki, T., Deyle, E. R., Souissi, S., Anneville, O., Adrian, R., Chiang, Y. R., Ichise, S., Kumagai, M., Matsuzaki, S. S., Shiah, F. K., Wu, J. T., Hsieh, C.H., & Sugihara, G. (2020). Long‐term warming destabilizes aquatic ecosystems through weakening biodiversity‐mediated causal networks. Global Change Biology, 26(11), 6413-6423.  LINK

64.

Frenken, T., Miki, T., Kagami, M., Van de Waal, D. B., Van Donk, E., Rohrlack, T., & Gsell, A. S. (2020). The potential of zooplankton in constraining chytrid epidemics in phytoplankton hosts. Ecology, 101(1), e02900. LINK

63.

Togaki, D., Doi, H., & Katano, I. (2020). Detection of freshwater mussels (Sinanodonta spp.) in artificial ponds through environmental DNA: a comparison with traditional hand collection methods. Limnology, 21(1), 59-65. LINK

62.

Takahara, T., Iwai, N., Yasumiba, K., & Igawa, T. (2020). Comparison of the detection of 3 endangered frog species by eDNA and acoustic surveys across 3 seasons. Freshwater Science, 39(1), 18-27. LINK

61.

Yatsuyanagi, T., Ishida, R., Sakata, M. K., Kanbe, T., Mizumoto, H., Kobayashi, Y., Kamada, S., Namba, S., Nii, H., Minamoto, T., & Araki, H. (2020). Environmental DNA monitoring for short-term reproductive migration of endemic anadromous species, Shishamo smelt (Spirinchus lanceolatus). Environmental DNA, 2(2), 130-139. LINK

60.

Tsuji, S., Miya, M., Ushio, M., Sato, H., Minamoto, T., & Yamanaka, H. (2020). Evaluating intraspecific genetic diversity using environmental DNA and denoising approach: A case study using tank water. Environmental DNA, 2(1), 42-52. LINK

59.

Jo, T., Fukuoka, A., Uchida, K., Ushimaru, A., & Minamoto, T. (2020). Multiplex real-time PCR enables the simultaneous detection of environmental DNA from freshwater fishes: a case study of three exotic and three threatened native fishes in Japan. Biological Invasions, 22(2), 455-471. LINK

58.

Jo, T., Arimoto, M., Murakami, H., Masuda, R., & Minamoto, T. (2020). Estimating shedding and decay rates of environmental nuclear DNA with relation to water temperature and biomass. Environmental DNA, 2(2), 140-151. LINK

57.

Kong, W. L., Miki, T., Lin, Y. Y., Makino, W., Urabe, J., Gu, S. H., & Machida, R. J. (2019). Nuclear and mitochondrial ribosomal ratio as an index of animal growth rate. Limnology and Oceanography: Methods, 17(11), 575-584. LINK

56.

Wu, Q., Takami, Y., Minamoto, T., & Ishikawa, T. (2019). The life history with seasonal migration of the lacustrine shrimp Palaemon paucidens in an ancient lake in Japan. Ecosphere, 10(4), e02628. LINK

55.

Wu, Q., Kawano, K., Ishikawa, T., Sakata, M. K., Nakao, R., Hiraiwa, M. K., Tsuji, S., Yamanaka, H., & Minamoto, T. (2019). Habitat selection and migration of the common shrimp, Palaemon paucidens in Lake Biwa, Japan—An eDNA‐based study. Environmental DNA, 1(1), 54-63. LINK

54.

Uchii, K., Doi, H., Okahashi, T., Katano, I., Yamanaka, H., Sakata, M. K., & Minamoto, T. (2019). Comparison of inhibition resistance among PCR reagents for detection and quantification of environmental DNA. Environmental DNA, 1(4), 359-367. LINK

53.

Tsuji, S., Takahara, T., Doi, H., Shibata, N., & Yamanaka, H. (2019). The detection of aquatic macroorganisms using environmental DNA analysis—A review of methods for collection, extraction, and detection. Environmental DNA, 1(2), 99-108. LINK

52.

Takeuchi, A., Watanabe, S., Yamamoto, S., Miller, M. J., Fukuba, T., Miwa, T., Okino, T., Minamoto, T., & Tsukamoto, K. (2019). First use of oceanic environmental DNA to study the spawning ecology of the Japanese eel Anguilla japonica. Marine Ecology Progress Series, 609, 187-196. LINK

51.

Takeuchi, A., Sado, T., Gotoh, R. O., Watanabe, S., Tsukamoto, K., & Miya, M. (2019). New PCR primers for metabarcoding environmental DNA from freshwater eels, genus Anguilla. Scientific reports, 9(1), 1-11. LINK

50.

Takahara, T., Ikebuchi, T., Doi, H., & Minamoto, T. (2019). Using environmental DNA to estimate the seasonal distribution and habitat preferences of a Japanese basket clam in Lake Shinji, Japan. Estuarine, Coastal and Shelf Science, 221, 15-20. LINK

49.

Sato, Y., Mizuyama, M., Sato, M., Minamoto, T., Kimura, R., & Toma, C. (2019). Environmental DNA metabarcoding to detect pathogenic Leptospira and associated organisms in leptospirosis-endemic areas of Japan. Scientific reports, 9(1), 1-11. LINK

48.

Sakai, Y., Kusakabe, A., Tsuchida, K., Tsuzuku, Y., Okada, S., Kitamura, T., Tomita, S., Mukai, T., Tagami, M., Takagi, M., Yaoi, Y., & Minamoto, T. (2019). Discovery of an unrecorded population of Yamato salamander (Hynobius vandenburghi) by GIS and eDNA analysis. Environmental DNA, 1(3), 281-289. LINK

47.

Murakami, H., Yoon, S., Kasai, A., Minamoto, T., Yamamoto, S., Sakata, M. K., Hirouchi, T., Sawada, H., Kondoh, M., Yamashita, Y., & Masuda, R. (2019). Dispersion and degradation of environmental DNA from caged fish in a marine environment. Fisheries science, 85(2), 327-337. LINK

46.

Morita, K., Sahashi, G., Miya, M., Kamada, S., Kanbe, T., & Araki, H. (2019). Ongoing localized extinctions of stream-dwelling white-spotted charr populations in small dammed-off habitats of Hokkaido Island, Japan. Hydrobiologia, 840(1), 207-213. LINK

45.

Minamoto, T., Hayami, K., Sakata, M. K., & Imamura, A. (2019). Real‐time polymerase chain reaction assays for environmental DNA detection of three salmonid fish in Hokkaido, Japan: Application to winter surveys. Ecological Research, 34(1), 237-242. LINK

44.

Matsuoka, S., Sugiyama, Y., Sato, H., Katano, I., Harada, K., & Doi, H. (2019). Spatial structure of fungal DNA assemblages revealed with eDNA metabarcoding in a forest river network in western Japan. Metabarcoding and Metagenomics, 3, e36335. LINK

43.

Matsuhashi, S., Minamoto, T., & Doi, H. (2019). Seasonal change in environmental DNA concentration of a submerged aquatic plant species. Freshwater Science, 38(3), 654-660. LINK

42.

Kyogoku, D., Kataoka, Y., & Kondoh, M. (2019). Who determines the timing of inflorescence closure of a sexual dandelion? Pollen donors versus recipients. Evolutionary Ecology, 33(5), 701-712. LINK

41.

Kyogoku, D., Kondoh, M., & Sota, T. (2019). Does past evolutionary history under different mating regimes influence the demographic dynamics of interspecific competition?. Ecology and evolution, 9(15), 8616-8624. LINK

40.

Komai, T., Gotoh, R. O., Sado, T., & Miya, M. (2019). Development of a new set of PCR primers for eDNA metabarcoding decapod crustaceans. Metabarcoding and Metagenomics, 3, e33835. LINK

39.

Kakuda, A., Doi, H., Souma, R., Nagano, M., Minamoto, T., & Katano, I. (2019). Environmental DNA detection and quantification of invasive red-eared sliders, Trachemy scripta elegans, in ponds and the influence of water quality. PeerJ, 7, e8155. LINK

38.

Jo, T., Murakami, H., Yamamoto, S., Masuda, R., & Minamoto, T. (2019). Effect of water temperature and fish biomass on environmental DNA shedding, degradation, and size distribution. Ecology and evolution, 9(3), 1135-1146. LINK

37.

Jo, T., Arimoto, M., Murakami, H., Masuda, R., & Minamoto, T. (2019). Particle size distribution of environmental DNA from the nuclei of marine fish. Environmental Science & Technology, 53(16), 9947-9956. LINK

36.

Iwai, N., Yasumiba, K., & Takahara, T. (2019). Efficacy of environmental DNA to detect and quantify stream tadpoles of Odorrana splendida. Royal Society open science, 6(1), 181798. LINK

35.

Itakura, H., Wakiya, R., Yamamoto, S., Kaifu, K., Sato, T., & Minamoto, T. (2019). Environmental DNA analysis reveals the spatial distribution, abundance, and biomass of Japanese eels at the river‐basin scale. Aquatic Conservation: Marine and Freshwater Ecosystems, 29(3), 361-373. LINK

34.

Ikeda, K., Doi, H., Terui, S., Kato, A., Mitsuzuka, T., Kawai, T., & Negishi, J. N. (2019). Estimating native and invasive crayfish distributions in relation to culvert barriers with environmental DNA. Freshwater Science, 38(3), 629-641. LINK

33.

Igawa, T., Takahara, T., Lau, Q., & Komaki, S. (2019). An application of PCR-RFLP species identification assay for environmental DNA detection. PeerJ, 7, e7597. LINK

32.

Horiuchi, T., Masuda, R., Murakami, H., Yamamoto, S., & Minamoto, T. (2019). Biomass‐dependent emission of environmental DNA in jack mackerel Trachurus japonicus juveniles. Journal of fish biology, 95(3), 979-981. LINK

31.

Fornillos, R. J. C., Sato, M. O., Tabios, I. K. B., Sato, M., Leonardo, L. R., Chigusa, Y., Minamoto, T., Kikuchi, M., Legaspi, E. R., & Fontanilla, I. K. C. (2019). Detection of Schistosoma japonicum and Oncomelania hupensis quadrasi environmental DNA and its potential utility to schistosomiasis japonica surveillance in the Philippines. PloS one, 14(11), e0224617. LINK

30.

Doi, H., Fukaya, K., Oka, S. I., Sato, K., Kondoh, M., & Miya, M. (2019). Evaluation of detection probabilities at the water-filtering and initial PCR steps in environmental DNA metabarcoding using a multispecies site occupancy model. Scientific reports, 9(1), 1-8. LINK

29.

Calata, F. I. C., Caranguian, C. Z., Mendoza, J. E. M., Fornillos, R. J. C., Tabios, I. K. B., Fontanilla, I. K. C., Leonardo, L. R., Sunico, L. S., Kawai, S., Chigusa, Y., Kikuchi, M., Sato, M., Minamoto, T., Baoanan, Z. G., & Sato, M. O. (2019). Analysis of environmental DNA and edaphic factors for the detection of the snail intermediate host Oncomelania hupensis quadrasi. Pathogens, 8(4), 160. LINK

28.

Fujii, K., Doi, H., Matsuoka, S., Nagano, M., Sato, H., & Yamanaka, H. (2019). Environmental DNA metabarcoding for fish community analysis in backwater lakes: A comparison of capture methods. Plos one, 14(1), e0210357. LINK

27.

Ushio, M., Hsieh, C. H., Masuda, R., Deyle, E. R., Ye, H., Chang, C. W., Sugihara, G., & Kondoh, M. (2018). Fluctuating interaction network and time-varying stability of a natural fish community. Nature, 554(7692), 360-363. LINK

26.

Nakagawa, H., Yamamoto, S., Sato, Y., Sado, T., Minamoto, T., & Miya, M. (2018). Comparing local-and regional-scale estimations of the diversity of stream fish using eDNA metabarcoding and conventional observation methods. Freshwater Biology, 63(6), 569-580. LINK

25.

Kawatsu, K., & Kondoh, M. (2018). Density-dependent interspecific interactions and the complexity–stability relationship. Proceedings of the Royal Society B: Biological Sciences, 285(1879), 20180698. LINK

24.

Kato, Y., Kondoh, M., Ishikawa, N. F., Togashi, H., Kohmatsu, Y., Yoshimura, M., Yoshimizu, C., Haraguchi, T. F., Osada, Y., Ohta, N., Tokuchi, N., Okuda, N., Miki, T., & Tayasu, I. (2018). Using food network unfolding to evaluate food–web complexity in terms of biodiversity: theory and applications. Ecology letters, 21(7), 1065-1074. LINK

23.

Kishimoto, N., & Okumura, M. (2018). Feasibility of Mercury-free Chemical Oxygen Demand (COD) Test with Excessive Addition of Silver Sulfate. Journal of Water and Environment Technology, 16(6), 221-232. LINK

22.

Maruyama, A., Sugatani, K., Watanabe, K., Yamanaka, H., & Imamura, A. (2018). Environmental DNA analysis as a non-invasive quantitative tool for reproductive migration of a threatened endemic fish in rivers. Ecology and Evolution, 8(23), 11964-11974. LINK

21.

Yamanaka, H., Takao, D., Maruyama, A., & Imamura, A. (2018). Species-specific detection of the endangered piscivorous cyprinid fish Opsariichthys uncirostris uncirostris, three-lips, using environmental DNA analysis. Ecological research, 33(5), 1075-1078. LINK

20.

Tsuji, S., Iguchi, Y., Shibata, N., Teramura, I., Kitagawa, T., & Yamanaka, H. (2018). Real-time multiplex PCR for simultaneous detection of multiple species from environmental DNA: an application on two Japanese medaka species. Scientific reports, 8(1), 1-8. LINK

19.

Wu, Q., Kawano, K., Uehara, Y., Okuda, N., Hongo, M., Tsuji, S., Yamanaka, H., & Minamoto, T. (2018). Environmental DNA reveals nonmigratory individuals of Palaemon paucidens overwintering in Lake Biwa shallow waters. Freshwater Science, 37(2), 307-314. LINK

18.

Ushio, M., Murakami, H., Masuda, R., Sado, T., Miya, M., Sakurai, S., Yamanaka, H., Minamoto, T., & Kondoh, M. (2018). Quantitative monitoring of multispecies fish environmental DNA using high-throughput sequencing. Metabarcoding and Metagenomics, 2, e23297. LINK

17.

Ushio, M., Fukuda, H., Inoue, T., Kobayashi, M., Kishida, O., Sato, K., Murata, K., Nikaido, M., Sado, T., Sato, Y., Takeshita, M., Iwasaki, W., Yamanaka, H., Kondoh, M., & Miya, M. (2017). Environmental DNA enables detection of terrestrial mammals from forest pond water. Molecular Ecology Resources, 17(6), e63-e75. LINK

16.

Sato, H., Sogo, Y., Doi, H., & Yamanaka, H. (2017). Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities. Scientific Reports, 7(1), 1-12. LINK

15.

Uchii, K., Doi, H., Yamanaka, H., & Minamoto, T. (2017). Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA. Ecology and evolution, 7(20), 8515-8522. LINK

14.

Tsuji, S., Ushio, M., Sakurai, S., Minamoto, T., & Yamanaka, H. (2017). Water temperature-dependent degradation of environmental DNA and its relation to bacterial abundance. PLoS One, 12(4), e0176608. LINK

13.

Yamanaka, H., Minamoto, T., Matsuura, J., Sakurai, S., Tsuji, S., Motozawa, H., Hongo, M., Sogo, Y., Kakimi, N., Teramura, I., Sugita, M., Baba, M., & Kondo, A. (2017). A simple method for preserving environmental DNA in water samples at ambient temperature by addition of cationic surfactant. Limnology, 18(2), 233-241. LINK

12.

Minamoto, T., Uchii, K., Takahara, T., Kitayoshi, T., Tsuji, S., Yamanaka, H., & Doi, H. (2017). Nuclear internal transcribed spacer-1 as a sensitive genetic marker for environmental DNA studies in common carp Cyprinus carpio. Molecular ecology resources, 17(2), 324-333. LINK

11.

Doi, H., Uchii, K., Matsuhashi, S., Takahara, T., Yamanaka, H., & Minamoto, T. (2017). Isopropanol precipitation method for collecting fish environmental DNA. Limnology and Oceanography: Methods, 15(2), 212-218. LINK

10.

Doi, H., Inui, R., Akamatsu, Y., Kanno, K., Yamanaka, H., Takahara, T., & Minamoto, T. (2017). Environmental DNA analysis for estimating the abundance and biomass of stream fish. Freshwater Biology, 62(1), 30-39. LINK

9.

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▪日本語論文

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